Modern Computational Tools for Chemistry with Corin Wagen
Episode
50 min
Read time
2 min
Topics
Startups, Design & UX, Artificial Intelligence
AI-Generated Summary
Key Takeaways
- ✓Legacy QM tool accessibility gap: Traditional quantum chemistry packages like Gaussian, ORCA, and Q-Chem require submitting text input files via SSH to HPC servers, then manually retrieving outputs — a workflow that functions for expert computational chemists but creates prohibitive friction for experimental chemists who want occasional calculations. Rowan eliminates this by handling compute allocation, job execution, and visualization automatically through a browser interface.
- ✓Force field accuracy problem: Standard molecular mechanics force fields used to rank molecular conformers achieve only a Pearson correlation coefficient of ~0.4 when predicting conformer energies — barely above random. Rowan's DFT-level calculations produce accurate conformer rankings, which directly impacts decisions about molecular shape before synthesis, potentially saving a week of lab work per molecule when incorrect geometries are caught early.
- ✓ML potentials as DFT replacement: Machine learning interatomic potentials now achieve near-DFT accuracy at 100–1,000x lower computational cost. Rowan integrates these models, making them accessible without programming. For drug designers working with organic small molecules containing 10–15 common elements, ML potentials cover the majority of practical use cases — conformer ranking, pKa prediction, bond dissociation energies — at speeds compatible with real-time decision-making.
- ✓Scientific software development rule: A software engineer's estimation framework applies directly to scientific tools: getting a prototype working takes time X, making it reliable across edge cases takes 3X more, and building a usable interface takes another 3X. Academic software stops after the first seventh of total effort because publications require only the prototype. Founders building scientific software products must budget for the remaining six-sevenths that academia never completes.
- ✓Market creation through evangelism: Rowan's growth strategy centers on reproducing published medicinal chemistry results — such as a Novartis paper — directly within the platform to demonstrate accuracy parity with established tools. Rather than converting existing QM users, the primary target is experimental chemists unfamiliar with quantum chemistry, requiring case-by-case demonstration of specific decision points: scaffold hops, atropisomer stability, pre-synthesis reaction feasibility checks.
What It Covers
Corin Wagen, founder of Rowan, explains how his cloud-based quantum chemistry platform democratizes high-accuracy molecular modeling for drug designers and chemists. The platform replaces legacy Fortran-based tools requiring SSH access with a web-native interface, incorporating machine learning potentials that run 100–1,000x faster than traditional density functional theory calculations.
Key Questions Answered
- •Legacy QM tool accessibility gap: Traditional quantum chemistry packages like Gaussian, ORCA, and Q-Chem require submitting text input files via SSH to HPC servers, then manually retrieving outputs — a workflow that functions for expert computational chemists but creates prohibitive friction for experimental chemists who want occasional calculations. Rowan eliminates this by handling compute allocation, job execution, and visualization automatically through a browser interface.
- •Force field accuracy problem: Standard molecular mechanics force fields used to rank molecular conformers achieve only a Pearson correlation coefficient of ~0.4 when predicting conformer energies — barely above random. Rowan's DFT-level calculations produce accurate conformer rankings, which directly impacts decisions about molecular shape before synthesis, potentially saving a week of lab work per molecule when incorrect geometries are caught early.
- •ML potentials as DFT replacement: Machine learning interatomic potentials now achieve near-DFT accuracy at 100–1,000x lower computational cost. Rowan integrates these models, making them accessible without programming. For drug designers working with organic small molecules containing 10–15 common elements, ML potentials cover the majority of practical use cases — conformer ranking, pKa prediction, bond dissociation energies — at speeds compatible with real-time decision-making.
- •Scientific software development rule: A software engineer's estimation framework applies directly to scientific tools: getting a prototype working takes time X, making it reliable across edge cases takes 3X more, and building a usable interface takes another 3X. Academic software stops after the first seventh of total effort because publications require only the prototype. Founders building scientific software products must budget for the remaining six-sevenths that academia never completes.
- •Market creation through evangelism: Rowan's growth strategy centers on reproducing published medicinal chemistry results — such as a Novartis paper — directly within the platform to demonstrate accuracy parity with established tools. Rather than converting existing QM users, the primary target is experimental chemists unfamiliar with quantum chemistry, requiring case-by-case demonstration of specific decision points: scaffold hops, atropisomer stability, pre-synthesis reaction feasibility checks.
Notable Moment
Wagen describes the long-term product vision as "SolidWorks for chemistry" — a modeling layer that shapes chemical intuition without replacing experimental work. The analogy reframes Rowan not as an AI that designs molecules, but as a real-time thinking tool chemists consult before and after each lab experiment.
Episode Transcript
Welcome to the Axial podcast. Axial is an early stage investment firm based in San Francisco. We partner with great founders and inventors investing in early stage life science companies often when they are no more than an idea. Axial is fanatical about helping the right venture who's compelled to build their own and journey business. Horn, great to have you on this podcast. I really appreciate you taking the time. Maybe you can start off and just introduce yourself and and tell us about or Rowan. Yeah. Thanks so much for having me. So my name is Corin, and the company I'm founding with my brother is Rowan. So we're a a web native, a cloud based platform for doing high level quantum chemistry calculations. So with Rowan, you can, you know, view, analyze, submit, and run sort of density functional theory, machine learned interatomic potentials, modeling sort of small molecules, with very high accuracy. And we take care of all of the sort of compute allocation, analysis, and running the jobs. So we make it just as easy as, you know, using an app. And so can you give me some examples of how users are kinda kinda playing around or using a road? What they're using it for or what sorts of users or both? Maybe both. Who are your main users right now, and what are they doing? What are they using a road for? Yeah. So sort of the biggest area where people wanna do these high accuracy sort of QM based calculations is in drug design, so for small molecules. So, you know, I think what people don't realize is that a lot of the existing computational methods that we use to model molecules, like force fields, don't actually work very well. So if you have a bunch of different conformers, you know, many molecules are flexible, they can adopt different shapes, and sort of a a classic force field gets the conformers ranking right with, like, a Pearson correlation coefficient of, like, point 4.3. Whereas with sort of our, higher accuracy methods, we can rank the conformer's pretty accurately. So you might wanna know you're gonna run a simulation. You're gonna or you're making a molecule and you wanna know what shape it has. You can model it in row and get the right answer. Another use case is like, you know, you wanna understand a barrier to a reaction or, like, you know, a molecule's flipping from rotating around a bond. You wanna know what the potential energy surface looks like, as it rotates to figure out if these are gonna be stable atropoisomers or not. So So that's another, thing you can use Rowan for. And, yeah, just modeling reactions. So cyclizations, diels alders, nucleophilic substitutions. If you're gonna run these reactions, you might wanna know if they look like they're gonna work or not. And that becomes incredibly important for, like, to synthesis the molecules, and for so much more. …
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Tools
“Wagen describes the long-term product vision as 'SolidWorks for chemistry' — a modeling layer that shapes chemical intuition without replacing experimental work.”
- RowanBy guest
“Corin Wagen, founder of Rowan, explains how his cloud-based quantum chemistry platform democratizes high-accuracy molecular modeling for drug designers and chemists.”
“Traditional quantum chemistry packages like Gaussian, ORCA, and Q-Chem require submitting text input files via SSH to HPC servers, then manually retrieving outputs”
“Traditional quantum chemistry packages like Gaussian, ORCA, and Q-Chem require submitting text input files via SSH to HPC servers, then manually retrieving outputs”
“Traditional quantum chemistry packages like Gaussian, ORCA, and Q-Chem require submitting text input files via SSH to HPC servers, then manually retrieving outputs”
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